Program
15 May (Tuesday)
Kaisla, Vilhonkatu 4, 00100 Helsinki |
16 May (Wednesday)
| Jasmijn Baaijens, Viral quasispecies reconstruction using variation graphs | |
| Daniel Valenzuela, Pan-genomic references for variant calling |
| Pall Melsted, Choose your k-mers wisely: a new approach to indexing a large collection of genomes | |
| Sven Rahmann, Towards ultrafast hashing of k-mers | |
| Jarno Alanko, Compact representations of variable length Markov models |
| Guillaume Holley, Bifrost: highly parallel and memory efficient construction of a colored and compacted de Bruijn graph | |
| Alan Kuhnle, Practical dynamic de Bruijn graphs | |
| Pierre Morisse, Hybrid correction of long reads using a variable-order de Bruijn graph |
Eteläinen Hesperiankatu 22, 00100 Helsinki |
17 May (Thursday)
| Tony Cox, Data mining of unmapped sequences in human WGS cohorts | |
| Hannes P. Eggertsson, Graphtyper enables population-scale genotyping using pangenome graphs |
| Eric Rivals, Hierarchical overlap graph: an alternative to the overlap graph | |
| Johannes Fischer, Distributed suffix array construction | |
| Sofia Teixeira, Link significance in phylogenetic analyses |
| Nicola Prezza, Detecting Mutations by eBWT | |
| Bastien Cazaux, Burrows-Wheeler transform and the Aho-Corasick automaton | |
| Veli Mäkinen, Minimum segmentation for pan-genomic founder reconstruction in optimal time |